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The game uses the in-game deck-building mechanism that is similar to other deck building games of this style, where each player starts with a small deck of resource cards. During the course of the game players buy cards from an open card pool to build their deck.

Each player begins with a small deck of cards, and during the game acquires new cards from the War Zone. The goal of the game is to conquer Moscow. When Moscow falls, the player with the most victory points wins. Victory points are acquired by conquering different cities and/or strategical positions during the game. When you attack a city, event cards are revealed to hamper your assault.

Barbarossa uses six different kinds of cards:
* Supply Cards: These provide points to buy other cards from the open card pool.
* Unit Cards: The use of these cards require "Operation Points" (Each turn you start with one Operation Point) and deliver the military strength to attack cities or strategic positions (or in other words gain victory point cards).
* Operation Cards: They give you a one time bonus in different forms. After use they are not just discarded but put out of play.
* Deploy Cards: They stay in the players play area and deliver bonuses in different forms every turn.
* Target Cards: The cities and strategic positions which deliver VPs, also if you conquered strategic positions it becomes easier to attack cities.
* Event Cards: If you attack the Target cards an event is drawn and stuff happens.